SNP Detail For rs10490626
1.Mapping Information
Human SNP ID rs10490626
Human chromosome chr2
Human SNP position 118078265
Pig chromosome chr15
Pig SNP position 27035346
2.Annotation Information
PubMed ID24097068
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24097068
StudyDiscovery and refinement of loci associated with lipid levels.
Disease/TraitLDL cholesterol
Initial sample94,595 European ancestry individuals
Replication sample93,982 European ancestry individuals
Region2q14.1
Chromosome idchr2
Chromosome position118078265
Reported geneINSIG2
Mapped geneLOC105373988
Upstream gene id
Downstream gene id
SNP gene ids105373988
Upstream gene distance
Downstream gene distance
SNP risk allelers10490626-A
SNPsrs10490626
Merged0
SNP id current10490626
Contextintergenic_variant
Intergenic0
Allele frequency0.08
P value0.000000000002
Pvalue mlog11.698970004336
P value text
Or beta0.051
%95 Ci[NR] unit decrease
PlatformNR [NR] (imputed)
CNVN
Mapped traitlow density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004611
Study accessionGCST002222
PubMed ID24097068
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24097068
StudyDiscovery and refinement of loci associated with lipid levels.
Disease/TraitCholesterol, total
Initial sample94,595 European ancestry individuals
Replication sample93,982 European ancestry individuals
Region2q14.1
Chromosome idchr2
Chromosome position118078265
Reported geneINSIG2
Mapped geneLOC105373988
Upstream gene id
Downstream gene id
SNP gene ids105373988
Upstream gene distance
Downstream gene distance
SNP risk allelers10490626-A
SNPsrs10490626
Merged0
SNP id current10490626
Contextintergenic_variant
Intergenic0
Allele frequency0.08
P value0.000000006
Pvalue mlog8.22184874961635
P value text
Or beta0.042
%95 Ci[NR] unit increase
PlatformNR [NR] (imputed)
CNVN
Mapped traittotal cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004574
Study accessionGCST002221