SNP Detail For rs10490193
1.Mapping Information
Human SNP ID rs10490193
Human chromosome chr2
Human SNP position 66731672
Pig chromosome chr3
Pig SNP position 78974447
2.Annotation Information
PubMed ID25378659
JournalJ Lipid Res
Linkwww.ncbi.nlm.nih.gov/pubmed/25378659
StudyGenetic Loci Associated with Circulating Levels of Very Long-Chain Saturated Fatty Acids.
Disease/TraitVery long-chain saturated fatty acid levels (fatty acid 20:0)
Initial sample10,129 European ancestry individuals
Replication sampleNA
Region2p14
Chromosome idchr2
Chromosome position66731672
Reported geneMEIS1
Mapped geneLOC101927577 - LOC101060019
Upstream gene id101927577
Downstream gene id101060019
SNP gene ids
Upstream gene distance28445
Downstream gene distance172764
SNP risk allelers10490193-A
SNPsrs10490193
Merged0
SNP id current10490193
Contextdownstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta4.494
%95 Ci[NR] Z score decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitvery long-chain saturated fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006796
Study accessionGCST002690