SNP Detail For rs10489759
1.Mapping Information
Human SNP ID rs10489759
Human chromosome chr1
Human SNP position 189620209
Pig chromosome chr10
Pig SNP position 6048626
2.Annotation Information
PubMed ID22542470
JournalVaccine
Linkwww.ncbi.nlm.nih.gov/pubmed/22542470
StudyGenome-wide association study of antibody response to smallpox vaccine.
Disease/TraitImmune response to smallpox vaccine (IL-6)
Initial sample217 African American individuals, 580 European ancestry individuals, 217 Hispanic individuals
Replication sampleNA
Region1q31.1
Chromosome idchr1
Chromosome position189620209
Reported geneLOC647132
Mapped geneLOC101929766 - LOC647132
Upstream gene id101929766
Downstream gene id647132
SNP gene ids
Upstream gene distance284676
Downstream gene distance369327
SNP risk allelers10489759-?
SNPsrs10489759
Merged0
SNP id current10489759
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.00000008
Pvalue mlog7.09691001300805
P value text(EA)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitresponse to vaccine
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004645
Study accessionGCST001491