SNP Detail For rs10488693
1.Mapping Information
Human SNP ID rs10488693
Human chromosome chr11
Human SNP position 61717684
Pig chromosome chr2
Pig SNP position 9379323
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region11q12.2
Chromosome idchr11
Chromosome position61717684
Reported geneNR
Mapped geneDAGLA
Upstream gene id
Downstream gene id
SNP gene ids747
Upstream gene distance
Downstream gene distance
SNP risk allelers10488693-?
SNPsrs10488693
Merged
SNP id current10488693
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000007
Pvalue mlog7.15490195998574
P value text(Japanese)
Or beta0.8403
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956