SNP Detail For rs10488029
1.Mapping Information
Human SNP ID rs10488029
Human chromosome chr7
Human SNP position 37027790
Pig chromosome chr18
Pig SNP position 40802930
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region7p14.2
Chromosome idchr7
Chromosome position37027790
Reported geneNR
Mapped geneELMO1
Upstream gene id
Downstream gene id
SNP gene ids9844
Upstream gene distance
Downstream gene distance
SNP risk allelers10488029-G
SNPsrs10488029
Merged0
SNP id current10488029
Contextintron_variant
Intergenic0
Allele frequency0.10578790637539
P value0.000004
Pvalue mlog5.39794000867203
P value text(IGP35)
Or beta0.2329
%95 Ci[0.13-0.33] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848