SNP Detail For rs1048497
1.Mapping Information
Human SNP ID rs1048497
Human chromosome chr12
Human SNP position 124014995
Pig chromosome chr14
Pig SNP position 30728484
2.Annotation Information
PubMed ID22589738
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22589738
StudyGenome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Disease/TraitVisceral adipose tissue adjusted for BMI
Initial sample5,560 European ancestry female individuals, 4,997 European ancestry male individuals
Replication sampleNA
Region12q24.31
Chromosome idchr12
Chromosome position124014995
Reported geneZNF664
Mapped geneZNF664-FAM101A, ZNF664
Upstream gene id
Downstream gene id
SNP gene ids100533183, 144348
Upstream gene distance
Downstream gene distance
SNP risk allelers1048497-G
SNPsrs1048497
Merged0
SNP id current1048497
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.83
P value0.000009
Pvalue mlog5.04575749056067
P value text(Overall)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitvisceral adipose tissue measurement, body mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004765, http://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST001523
PubMed ID22589738
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22589738
StudyGenome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Disease/TraitVisceral adipose tissue/subcutaneous adipose tissue ratio
Initial sample5,560 European ancestry female individuals, 4,997 European ancestry male individuals
Replication sampleNA
Region12q24.31
Chromosome idchr12
Chromosome position124014995
Reported geneZNF664
Mapped geneZNF664-FAM101A, ZNF664
Upstream gene id
Downstream gene id
SNP gene ids100533183, 144348
Upstream gene distance
Downstream gene distance
SNP risk allelers1048497-G
SNPsrs1048497
Merged0
SNP id current1048497
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.83
P value0.000007
Pvalue mlog5.15490195998574
P value text(women)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitvisceral:subcutaneous adipose tissue ratio
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004767
Study accessionGCST001524