Human SNP ID | rs1048466 |
---|---|
Human chromosome | chr12 |
Human SNP position | 442384 |
Pig chromosome | chr5 |
Pig SNP position | 69966966 |
PubMed ID | 23563609 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23563609 |
Study | Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity. |
Disease/Trait | Obesity (early onset extreme) |
Initial sample | 1,509 European ancestry cases, 5,380 European ancestry controls |
Replication sample | 971 European ancestry cases, 1,990 European ancestry controls |
Region | 12p13.33 |
Chromosome id | chr12 |
Chromosome position | 442384 |
Reported gene | CCDC77 |
Mapped gene | CCDC77 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 84318 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1048466-G |
SNPs | rs1048466 |
Merged | 0 |
SNP id current | 1048466 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.72 |
P value | 0.00000008 |
Pvalue mlog | 7.09691001300805 |
P value text | |
Or beta | 1.22 |
%95 Ci | [1.14-1.32] |
Platform | Affymetrix [~ 2000000] (imputed) |
CNV | N |
Mapped trait | obesity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001073 |
Study accession | GCST001957 |