SNP Detail For rs1048466
1.Mapping Information
Human SNP ID rs1048466
Human chromosome chr12
Human SNP position 442384
Pig chromosome chr5
Pig SNP position 69966966
2.Annotation Information
PubMed ID23563609
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23563609
StudyGenome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.
Disease/TraitObesity (early onset extreme)
Initial sample1,509 European ancestry cases, 5,380 European ancestry controls
Replication sample971 European ancestry cases, 1,990 European ancestry controls
Region12p13.33
Chromosome idchr12
Chromosome position442384
Reported geneCCDC77
Mapped geneCCDC77
Upstream gene id
Downstream gene id
SNP gene ids84318
Upstream gene distance
Downstream gene distance
SNP risk allelers1048466-G
SNPsrs1048466
Merged0
SNP id current1048466
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.72
P value0.00000008
Pvalue mlog7.09691001300805
P value text
Or beta1.22
%95 Ci[1.14-1.32]
PlatformAffymetrix [~ 2000000] (imputed)
CNVN
Mapped traitobesity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001073
Study accessionGCST001957