SNP Detail For rs10476160
1.Mapping Information
Human SNP ID rs10476160
Human chromosome chr5
Human SNP position 175547573
Pig chromosome chr2
Pig SNP position 83633287
2.Annotation Information
PubMed ID23509962
JournalBMC Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23509962
StudyA genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.
Disease/TraitVenous thromboembolism (SNP x SNP interaction)
Initial sample411 European ancestry cases, 1,228 European ancestry controls
Replication sample1,542 European ancestry cases, 1,110 European ancestry controls
Region5q35.2 x 8p23.2
Chromosome idchr5 x 8
Chromosome position175547573 x 5750141
Reported geneNR x NR
Mapped geneSFXN1 - HRH2 x LOC105377794 - LOC105377795
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers10476160-? x rs1707420-?
SNPsrs10476160 x rs1707420
Merged0
SNP id current
Contextintergenic_variant x intergenic_variant
Intergenic
Allele frequency
P value0.000000009
Pvalue mlog8.04575749056067
P value text
Or beta1.6129
%95 Ci[NR]
PlatformIllumina [291872]
CNVN
Mapped traitvenous thromboembolism
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004286
Study accessionGCST001913