Human SNP ID | rs10474352 |
---|---|
Human chromosome | chr5 |
Human SNP position | 91436408 |
Pig chromosome | chr2 |
Pig SNP position | 101627104 |
PubMed ID | 25038754 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25038754 |
Study | Genome-wide association analysis in East Asians identifies breast cancer susceptibility loci at 1q32.1, 5q14.3 and 15q26.1. |
Disease/Trait | Breast cancer |
Initial sample | 2,867 Chinese ancestry cases, 2,285 Chinese ancestry controls, 2,246 Korean ancestry cases, 2,052 Korean ancestry controls |
Replication sample | 5,029 Chinese ancestry cases, 5,302 Chinese ancestry controls, 6,066 Korean ancestry cases, 8,003 Korean ancestry controls, 6,572 Japanese ancestry cases, 6,539 Japanese ancestry controls, 16,003 European ancestry cases, 41,335 European ancestry controls |
Region | 5q14.3 |
Chromosome id | chr5 |
Chromosome position | 91436408 |
Reported gene | ARRDC3 |
Mapped gene | ARRDC3-AS1 - LOC105379078 |
Upstream gene id | 100129716 |
Downstream gene id | 105379078 |
SNP gene ids | |
Upstream gene distance | 15693 |
Downstream gene distance | 251068 |
SNP risk allele | rs10474352-C |
SNPs | rs10474352 |
Merged | 0 |
SNP id current | 10474352 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.482 |
P value | 0.000000002 |
Pvalue mlog | 8.69897000433601 |
P value text | (East Asian) |
Or beta | 1.09 |
%95 Ci | [1.06-1.12] |
Platform | Affymetrix [up to 1930412] (imputed) |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST002537 |