SNP Detail For rs10472076
1.Mapping Information
Human SNP ID rs10472076
Human chromosome chr5
Human SNP position 58888234
Pig chromosome chr16
Pig SNP position 40574144
2.Annotation Information
PubMed ID23535729
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535729
StudyLarge-scale genotyping identifies 41 new loci associated with breast cancer risk.
Disease/TraitBreast cancer
Initial sample10,052 European ancestry cases, 12,575 European ancestry controls
Replication sample45,290 European ancestry cases, 41,880 European ancestry controls
Region5q11.2
Chromosome idchr5
Chromosome position58888234
Reported geneRAB3C
Mapped geneRAB3C - PDE4D
Upstream gene id115827
Downstream gene id5144
SNP gene ids
Upstream gene distance28840
Downstream gene distance80804
SNP risk allelers10472076-C
SNPsrs10472076
Merged0
SNP id current10472076
Contextintergenic_variant
Intergenic1
Allele frequency0.38
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta1.05
%95 Ci[1.03-1.07]
PlatformAffymetrix, Illumina [~ 2600000] (imputed)
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001937