Human SNP ID | rs10470013 |
---|---|
Human chromosome | chr20 |
Human SNP position | 50993140 |
Pig chromosome | chr17 |
Pig SNP position | 58853366 |
PubMed ID | 26268530 |
---|---|
Journal | Brain |
Link | www.ncbi.nlm.nih.gov/pubmed/26268530 |
Study | GWAS of longitudinal amyloid accumulation on 18F-florbetapir PET in Alzheimer__s disease implicates microglial activation gene IL1RAP. |
Disease/Trait | Longitudinal change in brain amyloid plaque burden |
Initial sample | 41 European ancestry Alzheimer__s disease cases, 294 European ancestry Mild Cognitive Impairment cases, 160 European ancestry cognitively normal individuals |
Replication sample | NA |
Region | 20q13.13 |
Chromosome id | chr20 |
Chromosome position | 50993140 |
Reported gene | KCNG1 |
Mapped gene | MOCS3 - KCNG1 |
Upstream gene id | 27304 |
Downstream gene id | 3755 |
SNP gene ids | |
Upstream gene distance | 31277 |
Downstream gene distance | 10516 |
SNP risk allele | rs10470013-? |
SNPs | rs10470013 |
Merged | |
SNP id current | 10470013 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.11 |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | |
Or beta | 0.73 |
%95 Ci | [0.46-1.00] unit increase |
Platform | Illumina [6112217] (imputed) |
CNV | N |
Mapped trait | amyloid plaque accumulation rate |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007646 |
Study accession | GCST003082 |