SNP Detail For rs10470013
1.Mapping Information
Human SNP ID rs10470013
Human chromosome chr20
Human SNP position 50993140
Pig chromosome chr17
Pig SNP position 58853366
2.Annotation Information
PubMed ID26268530
JournalBrain
Linkwww.ncbi.nlm.nih.gov/pubmed/26268530
StudyGWAS of longitudinal amyloid accumulation on 18F-florbetapir PET in Alzheimer__s disease implicates microglial activation gene IL1RAP.
Disease/TraitLongitudinal change in brain amyloid plaque burden
Initial sample41 European ancestry Alzheimer__s disease cases, 294 European ancestry Mild Cognitive Impairment cases, 160 European ancestry cognitively normal individuals
Replication sampleNA
Region20q13.13
Chromosome idchr20
Chromosome position50993140
Reported geneKCNG1
Mapped geneMOCS3 - KCNG1
Upstream gene id27304
Downstream gene id3755
SNP gene ids
Upstream gene distance31277
Downstream gene distance10516
SNP risk allelers10470013-?
SNPsrs10470013
Merged
SNP id current10470013
Contextregulatory_region_variant
Intergenic1
Allele frequency0.11
P value0.0000007
Pvalue mlog6.15490195998574
P value text
Or beta0.73
%95 Ci[0.46-1.00] unit increase
PlatformIllumina [6112217] (imputed)
CNVN
Mapped traitamyloid plaque accumulation rate
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007646
Study accessionGCST003082