SNP Detail For rs10466239
1.Mapping Information
Human SNP ID rs10466239
Human chromosome chr10
Human SNP position 43354379
Pig chromosome chr14
Pig SNP position 66459388
2.Annotation Information
PubMed ID24478790
JournalFront Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24478790
StudyGenome wide association and linkage analyses identified three loci-4q25, 17q23.2, and 10q11.21-associated with variation in leukocyte telomere length: the Long Life Family Study.
Disease/TraitTelomere length
Initial sample4,829 European ancestry individuals from 586 families with exceptional longevity
Replication sampleNA
Region10q11.21
Chromosome idchr10
Chromosome position43354379
Reported geneFXYD4, RASGEF1A
Mapped geneLOC105378271 - FXYD4
Upstream gene id105378271
Downstream gene id53828
SNP gene ids
Upstream gene distance4039
Downstream gene distance17265
SNP risk allelers10466239-T
SNPsrs10466239
Merged0
SNP id current10466239
Contextregulatory_region_variant
Intergenic1
Allele frequency0.073
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta
%95 Ci[NR]
PlatformIllumina [9250000] (imputed)
CNVN
Mapped traittelomere length
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004505
Study accessionGCST002336