SNP Detail For rs1046080
1.Mapping Information
Human SNP ID rs1046080
Human chromosome chr6
Human SNP position 31628105
Pig chromosome chr7
Pig SNP position 27504799
2.Annotation Information
PubMed ID24816252
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24816252
StudyAn atlas of genetic influences on human blood metabolites.
Disease/TraitBlood metabolite ratios
Initial sampleUp to 5,591 European ancestry individuals
Replication sampleUp to 1,767 European ancestry individuals
Region6p21.33
Chromosome idchr6
Chromosome position31628105
Reported genePRRC2A
Mapped genePRRC2A
Upstream gene id
Downstream gene id
SNP gene ids7916
Upstream gene distance
Downstream gene distance
SNP risk allelers1046080-A
SNPsrs1046080
Merged0
SNP id current1046080
Contextmissense_variant
Intergenic0
Allele frequency0.74
P value0.00000000000001
Pvalue mlog14
P value text(X-11444/X-11470)
Or beta0.027
%95 Ci[0.019-0.035] unit increase
PlatformAffymetrix, Illumina [2100000] (imputed)
CNVN
Mapped traitblood metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005664
Study accessionGCST002442