SNP Detail For rs10457838
1.Mapping Information
Human SNP ID rs10457838
Human chromosome chr6
Human SNP position 149036411
Pig chromosome JH118969-1
Pig SNP position 18029
2.Annotation Information
PubMed ID25456346
JournalPsychoneuroendocrinology
Linkwww.ncbi.nlm.nih.gov/pubmed/25456346
StudyGenomic predictors of combat stress vulnerability and resilience in U.S. Marines: A genome-wide association study across multiple ancestries implicates PRTFDC1 as a potential PTSD gene.
Disease/TraitPost-traumatic stress disorder
Initial sample940 European, Hispanic, Native American, African American, East Asian and other ancestry cases, 2,554 European, Hispanic, Native American, African American, East Asian and other ancestry trauma-exposed controls
Replication sample313 European ancestry cases, 178 European ancestry trauma-exposed controls
Region6q25.1
Chromosome idchr6
Chromosome position149036411
Reported geneUST
Mapped geneUST
Upstream gene id
Downstream gene id
SNP gene ids10090
Upstream gene distance
Downstream gene distance
SNP risk allelers10457838-C
SNPsrs10457838
Merged0
SNP id current10457838
Contextintron_variant
Intergenic0
Allele frequency0.724
P value0.000002
Pvalue mlog5.69897000433601
P value text(African American)
Or beta6.702
%95 Ci[5.93-7.48]
PlatformIllumina [21693469] (imputed)
CNVN
Mapped traitpost-traumatic stress disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001358
Study accessionGCST002681