Human SNP ID | rs10454444 |
---|---|
Human chromosome | chr1 |
Human SNP position | 176680045 |
Pig chromosome | chr11 |
Pig SNP position | 28236057 |
PubMed ID | 25948407 |
---|---|
Journal | BMJ Open |
Link | www.ncbi.nlm.nih.gov/pubmed/25948407 |
Study | Genome-wide association study of perioperative myocardial infarction after coronary artery bypass surgery. |
Disease/Trait | Perioperative myocardial infarction in coronary artery bypass surgery |
Initial sample | 112 cases, 1,321 controls |
Replication sample | 113 European ancestry cases, 509 European ancestry controls |
Region | 1q25.2 |
Chromosome id | chr1 |
Chromosome position | 176680045 |
Reported gene | PAPPA2 |
Mapped gene | PAPPA2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 60676 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10454444-? |
SNPs | rs10454444 |
Merged | |
SNP id current | 10454444 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 2.17 |
%95 Ci | [1.59-3.03] |
Platform | Illumina [534390] |
CNV | N |
Mapped trait | coronary artery bypass, myocardial infarction |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003776, http://www.ebi.ac.uk/efo/EFO_0000612 |
Study accession | GCST002892 |
PubMed ID | 25948407 |
Journal | BMJ Open |
Link | www.ncbi.nlm.nih.gov/pubmed/25948407 |
Study | Genome-wide association study of perioperative myocardial infarction after coronary artery bypass surgery. |
Disease/Trait | Perioperative myocardial infarction in coronary artery bypass surgery |
Initial sample | 112 cases, 1,321 controls |
Replication sample | 113 European ancestry cases, 509 European ancestry controls |
Region | 1q25.2 |
Chromosome id | chr1;1 |
Chromosome position | 176680045;176677864 |
Reported gene | PAPPA2 |
Mapped gene | PAPPA2; PAPPA2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10454444-G; rs17546000-A |
SNPs | rs10454444; rs17546000 |
Merged | |
SNP id current | |
Context | intron_variant; intron_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 2.1691973 |
%95 Ci | [NR] |
Platform | Illumina [534390] |
CNV | N |
Mapped trait | coronary artery bypass, myocardial infarction |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003776, http://www.ebi.ac.uk/efo/EFO_0000612 |
Study accession | GCST002892 |
PubMed ID | 25948407 |
Journal | BMJ Open |
Link | www.ncbi.nlm.nih.gov/pubmed/25948407 |
Study | Genome-wide association study of perioperative myocardial infarction after coronary artery bypass surgery. |
Disease/Trait | Perioperative myocardial infarction in coronary artery bypass surgery |
Initial sample | 112 cases, 1,321 controls |
Replication sample | 113 European ancestry cases, 509 European ancestry controls |
Region | 1q25.2 |
Chromosome id | chr1;1 |
Chromosome position | 176691111;176680045 |
Reported gene | PAPPA2 |
Mapped gene | PAPPA2; PAPPA2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs726252-G; rs10454444-G |
SNPs | rs726252; rs10454444 |
Merged | |
SNP id current | |
Context | 3_prime_UTR_variant; intron_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 2.1691973 |
%95 Ci | [NR] |
Platform | Illumina [534390] |
CNV | N |
Mapped trait | coronary artery bypass, myocardial infarction |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003776, http://www.ebi.ac.uk/efo/EFO_0000612 |
Study accession | GCST002892 |