SNP Detail For rs10454444
1.Mapping Information
Human SNP ID rs10454444
Human chromosome chr1
Human SNP position 176680045
Pig chromosome chr11
Pig SNP position 28236057
2.Annotation Information
PubMed ID25948407
JournalBMJ Open
Linkwww.ncbi.nlm.nih.gov/pubmed/25948407
StudyGenome-wide association study of perioperative myocardial infarction after coronary artery bypass surgery.
Disease/TraitPerioperative myocardial infarction in coronary artery bypass surgery
Initial sample112 cases, 1,321 controls
Replication sample113 European ancestry cases, 509 European ancestry controls
Region1q25.2
Chromosome idchr1
Chromosome position176680045
Reported genePAPPA2
Mapped genePAPPA2
Upstream gene id
Downstream gene id
SNP gene ids60676
Upstream gene distance
Downstream gene distance
SNP risk allelers10454444-?
SNPsrs10454444
Merged
SNP id current10454444
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta2.17
%95 Ci[1.59-3.03]
PlatformIllumina [534390]
CNVN
Mapped traitcoronary artery bypass, myocardial infarction
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003776, http://www.ebi.ac.uk/efo/EFO_0000612
Study accessionGCST002892
PubMed ID25948407
JournalBMJ Open
Linkwww.ncbi.nlm.nih.gov/pubmed/25948407
StudyGenome-wide association study of perioperative myocardial infarction after coronary artery bypass surgery.
Disease/TraitPerioperative myocardial infarction in coronary artery bypass surgery
Initial sample112 cases, 1,321 controls
Replication sample113 European ancestry cases, 509 European ancestry controls
Region1q25.2
Chromosome idchr1;1
Chromosome position176680045;176677864
Reported genePAPPA2
Mapped genePAPPA2; PAPPA2
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers10454444-G; rs17546000-A
SNPsrs10454444; rs17546000
Merged
SNP id current
Contextintron_variant; intron_variant
Intergenic
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta2.1691973
%95 Ci[NR]
PlatformIllumina [534390]
CNVN
Mapped traitcoronary artery bypass, myocardial infarction
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003776, http://www.ebi.ac.uk/efo/EFO_0000612
Study accessionGCST002892
PubMed ID25948407
JournalBMJ Open
Linkwww.ncbi.nlm.nih.gov/pubmed/25948407
StudyGenome-wide association study of perioperative myocardial infarction after coronary artery bypass surgery.
Disease/TraitPerioperative myocardial infarction in coronary artery bypass surgery
Initial sample112 cases, 1,321 controls
Replication sample113 European ancestry cases, 509 European ancestry controls
Region1q25.2
Chromosome idchr1;1
Chromosome position176691111;176680045
Reported genePAPPA2
Mapped genePAPPA2; PAPPA2
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers726252-G; rs10454444-G
SNPsrs726252; rs10454444
Merged
SNP id current
Context3_prime_UTR_variant; intron_variant
Intergenic
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta2.1691973
%95 Ci[NR]
PlatformIllumina [534390]
CNVN
Mapped traitcoronary artery bypass, myocardial infarction
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003776, http://www.ebi.ac.uk/efo/EFO_0000612
Study accessionGCST002892