SNP Detail For rs10453225
1.Mapping Information
Human SNP ID rs10453225
Human chromosome chr9
Human SNP position 106157939
Pig chromosome chr1
Pig SNP position 277101261
2.Annotation Information
PubMed ID25231870
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25231870
StudyParent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.
Disease/TraitMenarche (age at onset)
Initial sampleUp to 182,413 European ancestry females
Replication sampleNA
Region9q31.2
Chromosome idchr9
Chromosome position106157939
Reported geneTMEM38B
Mapped geneLOC105376201 - LOC105376202
Upstream gene id105376201
Downstream gene id105376202
SNP gene ids
Upstream gene distance116589
Downstream gene distance152502
SNP risk allelers10453225-G
SNPsrs10453225
Merged0
SNP id current10453225
Contextintron_variant
Intergenic1
Allele frequency0.68
P value6E-66
Pvalue mlog65.2218487496163
P value text
Or beta0.09
%95 Ci[0.08-0.1] unit increase
PlatformAffymetrix, Illumina [2441815] (imputed)
CNVN
Mapped traitage at menarche
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703
Study accessionGCST002541