SNP Detail For rs10438978
1.Mapping Information
Human SNP ID rs10438978
Human chromosome chr18
Human SNP position 49631816
Pig chromosome chr1
Pig SNP position 108699794
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitHDL cholesterol
Initial sampleup to 62,166 European ancestry individuals
Replication sampleNA
Region18q21.1
Chromosome idchr18
Chromosome position49631816
Reported geneLIPG
Mapped geneLOC105372112
Upstream gene id
Downstream gene id
SNP gene ids105372112
Upstream gene distance
Downstream gene distance
SNP risk allelers10438978-C
SNPsrs10438978
Merged
SNP id current10438978
Contextintergenic_variant
Intergenic0
Allele frequency0.81
P value8E-36
Pvalue mlog35.096910013008
P value text
Or beta0.095
%95 Ci[0.079-0.111] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST002899