SNP Detail For rs1043099
1.Mapping Information
Human SNP ID rs1043099
Human chromosome chr22
Human SNP position 30285268
Pig chromosome chr14
Pig SNP position 50301017
2.Annotation Information
PubMed ID24449572
JournalArthritis Rheumatol
Linkwww.ncbi.nlm.nih.gov/pubmed/24449572
StudyNovel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study.
Disease/TraitRheumatoid arthritis
Initial sample3,034 European ancestry cases, 5,271 European ancestry controls
Replication sample4,726 European ancestry cases, 2,625 European ancestry controls
Region22q12.2
Chromosome idchr22
Chromosome position30285268
Reported geneGATSL3
Mapped geneGATSL3
Upstream gene id
Downstream gene id
SNP gene ids652968
Upstream gene distance
Downstream gene distance
SNP risk allelers1043099-?
SNPsrs1043099
Merged0
SNP id current1043099
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.79
P value0.000000007
Pvalue mlog8.15490195998574
P value text
Or beta1.19
%95 Ci[1.12-1.27]
PlatformAffymetrix, Illumina [1831729] (imputed)
CNVN
Mapped traitrheumatoid arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000685
Study accessionGCST002323