Human SNP ID | rs1043099 |
---|---|
Human chromosome | chr22 |
Human SNP position | 30285268 |
Pig chromosome | chr14 |
Pig SNP position | 50301017 |
PubMed ID | 24449572 |
---|---|
Journal | Arthritis Rheumatol |
Link | www.ncbi.nlm.nih.gov/pubmed/24449572 |
Study | Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | 3,034 European ancestry cases, 5,271 European ancestry controls |
Replication sample | 4,726 European ancestry cases, 2,625 European ancestry controls |
Region | 22q12.2 |
Chromosome id | chr22 |
Chromosome position | 30285268 |
Reported gene | GATSL3 |
Mapped gene | GATSL3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 652968 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1043099-? |
SNPs | rs1043099 |
Merged | 0 |
SNP id current | 1043099 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.79 |
P value | 0.000000007 |
Pvalue mlog | 8.15490195998574 |
P value text | |
Or beta | 1.19 |
%95 Ci | [1.12-1.27] |
Platform | Affymetrix, Illumina [1831729] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST002323 |