SNP Detail For rs1042779
1.Mapping Information
Human SNP ID rs1042779
Human chromosome chr3
Human SNP position 52786995
Pig chromosome chr13
Pig SNP position 38096795
2.Annotation Information
PubMed ID19416921
JournalProc Natl Acad Sci U S A
Linkwww.ncbi.nlm.nih.gov/pubmed/19416921
StudyGenome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.
Disease/TraitBipolar disorder
Initial sample3,683 European ancestry cases, 14,507 European ancestry controls
Replication sampleNA
Region3p21.1
Chromosome idchr3
Chromosome position52786995
Reported geneITIH1, NEK4
Mapped geneITIH1
Upstream gene id
Downstream gene id
SNP gene ids3697
Upstream gene distance
Downstream gene distance
SNP risk allelers1042779-A
SNPsrs1042779
Merged0
SNP id current1042779
Contextmissense_variant
Intergenic0
Allele frequency0.63
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta1.19
%95 Ci[1.11-1.27]
PlatformAffymetrix, Illumina [2366197] (imputed)
CNVN
Mapped traitbipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST000387