SNP Detail For rs1041968
1.Mapping Information
Human SNP ID rs1041968
Human chromosome chr2
Human SNP position 21009932
Pig chromosome chr3
Pig SNP position 125340751
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitCholesterol, total
Initial sampleup to 62,166 European ancestry individuals
Replication sampleNA
Region2p24.1
Chromosome idchr2
Chromosome position21009932
Reported geneAPOB
Mapped geneAPOB
Upstream gene id
Downstream gene id
SNP gene ids338
Upstream gene distance
Downstream gene distance
SNP risk allelers1041968-A
SNPsrs1041968
Merged
SNP id current1041968
Contextsynonymous_variant
Intergenic0
Allele frequency0.48
P value5E-54
Pvalue mlog53.3010299956639
P value text
Or beta0.095
%95 Ci[0.083-0.107] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traittotal cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004574
Study accessionGCST002896