SNP Detail For rs10414149
1.Mapping Information
Human SNP ID rs10414149
Human chromosome chr19
Human SNP position 51624491
Pig chromosome chr6
Pig SNP position 51819178
2.Annotation Information
PubMed ID25642632
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25642632
StudyDiscovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.
Disease/TraitLeprosy
Initial sample1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases
Replication sample6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls
Region19q13.41
Chromosome idchr19
Chromosome position51624491
Reported geneSIGLEC5
Mapped geneSIGLEC5
Upstream gene id
Downstream gene id
SNP gene ids8778
Upstream gene distance
Downstream gene distance
SNP risk allelers10414149-A
SNPsrs10414149
Merged0
SNP id current10414149
Contextintron_variant
Intergenic0
Allele frequency0.835
P value0.000000003
Pvalue mlog8.52287874528033
P value text
Or beta1.2048193
%95 Ci[NR]
PlatformIllumina [4577171] (imputed)
CNVN
Mapped traitleprosy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001054
Study accessionGCST002772