Human SNP ID | rs10414149 |
---|---|
Human chromosome | chr19 |
Human SNP position | 51624491 |
Pig chromosome | chr6 |
Pig SNP position | 51819178 |
PubMed ID | 25642632 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25642632 |
Study | Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy. |
Disease/Trait | Leprosy |
Initial sample | 1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases |
Replication sample | 6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls |
Region | 19q13.41 |
Chromosome id | chr19 |
Chromosome position | 51624491 |
Reported gene | SIGLEC5 |
Mapped gene | SIGLEC5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8778 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10414149-A |
SNPs | rs10414149 |
Merged | 0 |
SNP id current | 10414149 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.835 |
P value | 0.000000003 |
Pvalue mlog | 8.52287874528033 |
P value text | |
Or beta | 1.2048193 |
%95 Ci | [NR] |
Platform | Illumina [4577171] (imputed) |
CNV | N |
Mapped trait | leprosy |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001054 |
Study accession | GCST002772 |