Human SNP ID | rs1040026 |
---|---|
Human chromosome | chr12 |
Human SNP position | 70816898 |
Pig chromosome | JH118880-1 |
Pig SNP position | 77567 |
PubMed ID | 26379185 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26379185 |
Study | No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity. |
Disease/Trait | Mild influenza (H1N1) infection |
Initial sample | 107 European ancestry mild cases, 549 European ancestry population controls |
Replication sample | NA |
Region | 12q15 |
Chromosome id | chr12 |
Chromosome position | 70816898 |
Reported gene | PTPRR |
Mapped gene | PTPRR |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5801 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1040026-? |
SNPs | rs1040026 |
Merged | |
SNP id current | 1040026 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.003704 |
P value | 4E-25 |
Pvalue mlog | 24.397940008672 |
P value text | |
Or beta | 37.46 |
%95 Ci | [36.38-38.54] |
Platform | Affymetrix [547296] |
CNV | N |
Mapped trait | influenza A (H1N1) |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_1001488 |
Study accession | GCST003124 |
PubMed ID | 26379185 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26379185 |
Study | No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity. |
Disease/Trait | Influenza A (H1N1) infection |
Initial sample | 49 European ancestry severe cases, 107 European ancestry mild cases, 549 European ancestry population controls |
Replication sample | NA |
Region | 12q15 |
Chromosome id | chr12 |
Chromosome position | 70816898 |
Reported gene | PTPRR |
Mapped gene | PTPRR |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5801 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1040026-? |
SNPs | rs1040026 |
Merged | |
SNP id current | 1040026 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.003704 |
P value | 0.000000000000000003 |
Pvalue mlog | 17.5228787452803 |
P value text | |
Or beta | 26.11 |
%95 Ci | [8.945-76.19] |
Platform | Affymetrix [547296] |
CNV | N |
Mapped trait | influenza A (H1N1) |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_1001488 |
Study accession | GCST003125 |