SNP Detail For rs1040026
1.Mapping Information
Human SNP ID rs1040026
Human chromosome chr12
Human SNP position 70816898
Pig chromosome JH118880-1
Pig SNP position 77567
2.Annotation Information
PubMed ID26379185
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26379185
StudyNo Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.
Disease/TraitMild influenza (H1N1) infection
Initial sample107 European ancestry mild cases, 549 European ancestry population controls
Replication sampleNA
Region12q15
Chromosome idchr12
Chromosome position70816898
Reported genePTPRR
Mapped genePTPRR
Upstream gene id
Downstream gene id
SNP gene ids5801
Upstream gene distance
Downstream gene distance
SNP risk allelers1040026-?
SNPsrs1040026
Merged
SNP id current1040026
Contextintron_variant
Intergenic0
Allele frequency0.003704
P value4E-25
Pvalue mlog24.397940008672
P value text
Or beta37.46
%95 Ci[36.38-38.54]
PlatformAffymetrix [547296]
CNVN
Mapped traitinfluenza A (H1N1)
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_1001488
Study accessionGCST003124
PubMed ID26379185
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26379185
StudyNo Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.
Disease/TraitInfluenza A (H1N1) infection
Initial sample49 European ancestry severe cases, 107 European ancestry mild cases, 549 European ancestry population controls
Replication sampleNA
Region12q15
Chromosome idchr12
Chromosome position70816898
Reported genePTPRR
Mapped genePTPRR
Upstream gene id
Downstream gene id
SNP gene ids5801
Upstream gene distance
Downstream gene distance
SNP risk allelers1040026-?
SNPsrs1040026
Merged
SNP id current1040026
Contextintron_variant
Intergenic0
Allele frequency0.003704
P value0.000000000000000003
Pvalue mlog17.5228787452803
P value text
Or beta26.11
%95 Ci[8.945-76.19]
PlatformAffymetrix [547296]
CNVN
Mapped traitinfluenza A (H1N1)
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_1001488
Study accessionGCST003125