Human SNP ID | rs1038304 |
---|---|
Human chromosome | chr6 |
Human SNP position | 151612040 |
Pig chromosome | chr1 |
Pig SNP position | 17079368 |
PubMed ID | 18445777 |
---|---|
Journal | N Engl J Med |
Link | www.ncbi.nlm.nih.gov/pubmed/18445777 |
Study | Multiple genetic loci for bone mineral density and fractures. |
Disease/Trait | Bone mineral density (hip) |
Initial sample | 5,861 European ancestry individuals |
Replication sample | 7,925 European ancestry individuals |
Region | 6q25.1 |
Chromosome id | chr6 |
Chromosome position | 151612040 |
Reported gene | ESR1 |
Mapped gene | CCDC170 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 80129 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1038304-G |
SNPs | rs1038304 |
Merged | 0 |
SNP id current | 1038304 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.47 |
P value | 0.000000005 |
Pvalue mlog | 8.30102999566398 |
P value text | |
Or beta | 0.08 |
%95 Ci | [0.06-0.11] s.d. decrease |
Platform | Illumina [301019] |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST000181 |
PubMed ID | 18445777 |
Journal | N Engl J Med |
Link | www.ncbi.nlm.nih.gov/pubmed/18445777 |
Study | Multiple genetic loci for bone mineral density and fractures. |
Disease/Trait | Bone mineral density (spine) |
Initial sample | 5,861 European ancestry individuals |
Replication sample | 7,925 European ancestry individuals |
Region | 6q25.1 |
Chromosome id | chr6 |
Chromosome position | 151612040 |
Reported gene | ESR1, C6orf97 |
Mapped gene | CCDC170 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 80129 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1038304-G |
SNPs | rs1038304 |
Merged | 0 |
SNP id current | 1038304 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.47 |
P value | 0.00000000004 |
Pvalue mlog | 10.397940008672 |
P value text | |
Or beta | 0.1 |
%95 Ci | [0.07-0.13] s.d. decrease |
Platform | Illumina [301019] |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST000180 |
PubMed ID | 19079262 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19079262 |
Study | New sequence variants associated with bone mineral density. |
Disease/Trait | Bone mineral density (hip) |
Initial sample | 6,865 European ancestry individuals |
Replication sample | 8,510 European ancestry individuals |
Region | 6q25.1 |
Chromosome id | chr6 |
Chromosome position | 151612040 |
Reported gene | ESR1 |
Mapped gene | CCDC170 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 80129 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1038304-G |
SNPs | rs1038304 |
Merged | 0 |
SNP id current | 1038304 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.47 |
P value | 0.0000000004 |
Pvalue mlog | 9.39794000867203 |
P value text | |
Or beta | 0.08 |
%95 Ci | [0.06-0.11] s.d. decrease |
Platform | Illumina [305051] |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST000297 |