SNP Detail For rs1035275
1.Mapping Information
Human SNP ID rs1035275
Human chromosome chr3
Human SNP position 64188225
Pig chromosome chr13
Pig SNP position 50181349
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region3p14.1
Chromosome idchr3
Chromosome position64188225
Reported geneNR
Mapped genePRICKLE2, PRICKLE2-AS3
Upstream gene id
Downstream gene id
SNP gene ids166336, 100874243
Upstream gene distance
Downstream gene distance
SNP risk allelers1035275-C
SNPsrs1035275
Merged0
SNP id current1035275
Contextintron_variant
Intergenic0
Allele frequency0.444727228304406
P value0.000009
Pvalue mlog5.04575749056067
P value text(IGP8)
Or beta0.1416
%95 Ci[0.079-0.204] unit decrease
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848