SNP Detail For rs1034566
1.Mapping Information
Human SNP ID rs1034566
Human chromosome chr22
Human SNP position 19996754
Pig chromosome chr14
Pig SNP position 55063954
2.Annotation Information
PubMed ID22139419
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/22139419
StudyNew gene functions in megakaryopoiesis and platelet formation.
Disease/TraitPlatelet count
Initial sample47,005 European ancestry individuals, 1,661 Val Borbera individuals
Replication sampleUp to 18,838 European ancestry individuals
Region22q11.21
Chromosome idchr22
Chromosome position19996754
Reported geneARVCF
Mapped geneARVCF
Upstream gene id
Downstream gene id
SNP gene ids421
Upstream gene distance
Downstream gene distance
SNP risk allelers1034566-T
SNPsrs1034566
Merged0
SNP id current1034566
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta2.128
%95 Ci[1.38-2.88] 10^9/l increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitplatelet count
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004309
Study accessionGCST001337