Human SNP ID | rs1034394 |
---|---|
Human chromosome | chr22 |
Human SNP position | 34427837 |
Pig chromosome | JH118960-1 |
Pig SNP position | 152916 |
PubMed ID | 23377640 |
---|---|
Journal | Am J Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23377640 |
Study | Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies. |
Disease/Trait | Major depressive disorder |
Initial sample | Up to 2,256 European ancestry cases |
Replication sample | NA |
Region | 22q12.3 |
Chromosome id | chr22 |
Chromosome position | 34427837 |
Reported gene | ENOX1 |
Mapped gene | LOC105373012 - LOC441996 |
Upstream gene id | 105373012 |
Downstream gene id | 441996 |
SNP gene ids | |
Upstream gene distance | 65524 |
Downstream gene distance | 160917 |
SNP risk allele | rs1034394-G |
SNPs | rs1034394 |
Merged | 0 |
SNP id current | 1034394 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.3390146 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (% improvement - SSRI treated - 12 weeks) |
Or beta | 0.2107 |
%95 Ci | [0.12-0.3] unit increase |
Platform | Affymetrix, Illumina [1200000] (imputed) |
CNV | N |
Mapped trait | unipolar depression |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003761 |
Study accession | GCST001850 |