SNP Detail For rs103294
1.Mapping Information
Human SNP ID rs103294
Human chromosome chr19
Human SNP position 54293995
Pig chromosome chr16
Pig SNP position 86144812
2.Annotation Information
PubMed ID23023329
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23023329
StudyGenome-wide association study in Chinese men identifies two new prostate cancer risk loci at 9q31.2 and 19q13.4.
Disease/TraitProstate cancer
Initial sample1,417 Han Chinese ancestry cases, 1,008 Han Chinese ancestry controls
Replication sample3,067 Han Chinese ancestry cases, 7,926 Han Chinese ancestry controls
Region19q13.42
Chromosome idchr19
Chromosome position54293995
Reported geneLILRA3
Mapped geneMIR4752 - LILRA5
Upstream gene id100616171
Downstream gene id353514
SNP gene ids
Upstream gene distance11815
Downstream gene distance13075
SNP risk allelers103294-C
SNPsrs103294
Merged0
SNP id current103294
Context3_prime_UTR_variant
Intergenic1
Allele frequency0.238
P value0.0000000000000005
Pvalue mlog15.3010299956639
P value text
Or beta1.28
%95 Ci[1.21-1.36]
PlatformIllumina [587294]
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001702