Human SNP ID | rs1028771 |
---|---|
Human chromosome | chr1 |
Human SNP position | 183201813 |
Pig chromosome | chr1 |
Pig SNP position | 313178897 |
PubMed ID | 21347282 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21347282 |
Study | Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project. |
Disease/Trait | HDL cholesterol |
Initial sample | 7,813 African American individuals |
Replication sample | 4,323 African American and Afro-Caribbean individuals |
Region | 1q25.3 |
Chromosome id | chr1 |
Chromosome position | 183201813 |
Reported gene | LAMC2 |
Mapped gene | LAMC2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3918 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1028771-A |
SNPs | rs1028771 |
Merged | 0 |
SNP id current | 1028771 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.97 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 0.2188 |
%95 Ci | [0.13-0.31] unit decrease |
Platform | Affymetrix [~ 2740000] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST000974 |