SNP Detail For rs1028771
1.Mapping Information
Human SNP ID rs1028771
Human chromosome chr1
Human SNP position 183201813
Pig chromosome chr1
Pig SNP position 313178897
2.Annotation Information
PubMed ID21347282
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21347282
StudyGenome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.
Disease/TraitHDL cholesterol
Initial sample7,813 African American individuals
Replication sample4,323 African American and Afro-Caribbean individuals
Region1q25.3
Chromosome idchr1
Chromosome position183201813
Reported geneLAMC2
Mapped geneLAMC2
Upstream gene id
Downstream gene id
SNP gene ids3918
Upstream gene distance
Downstream gene distance
SNP risk allelers1028771-A
SNPsrs1028771
Merged0
SNP id current1028771
Contextintron_variant
Intergenic0
Allele frequency0.97
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta0.2188
%95 Ci[0.13-0.31] unit decrease
PlatformAffymetrix [~ 2740000] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST000974