Human SNP ID | rs1027643 |
---|---|
Human chromosome | chr5 |
Human SNP position | 92558085 |
Pig chromosome | chr2 |
Pig SNP position | 102868375 |
PubMed ID | 22544364 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22544364 |
Study | A genome-wide association study identifies susceptibility loci for Wilms tumor. |
Disease/Trait | Wilms tumor |
Initial sample | 757 European ancestry cases, 1,879 European ancestry controls |
Replication sample | 1,488 European ancestry cases, 3,851 European ancestry controls |
Region | 5q14.3 |
Chromosome id | chr5 |
Chromosome position | 92558085 |
Reported gene | NR |
Mapped gene | LOC105379082 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105379082 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1027643-T |
SNPs | rs1027643 |
Merged | 0 |
SNP id current | 1027643 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.05 |
P value | 0.0000000005 |
Pvalue mlog | 9.30102999566398 |
P value text | |
Or beta | 1.43 |
%95 Ci | [1.18-1.73] |
Platform | Illumina [599255] |
CNV | N |
Mapped trait | Nephroblastoma |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_654 |
Study accession | GCST001500 |