SNP Detail For rs1027643
1.Mapping Information
Human SNP ID rs1027643
Human chromosome chr5
Human SNP position 92558085
Pig chromosome chr2
Pig SNP position 102868375
2.Annotation Information
PubMed ID22544364
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22544364
StudyA genome-wide association study identifies susceptibility loci for Wilms tumor.
Disease/TraitWilms tumor
Initial sample757 European ancestry cases, 1,879 European ancestry controls
Replication sample1,488 European ancestry cases, 3,851 European ancestry controls
Region5q14.3
Chromosome idchr5
Chromosome position92558085
Reported geneNR
Mapped geneLOC105379082
Upstream gene id
Downstream gene id
SNP gene ids105379082
Upstream gene distance
Downstream gene distance
SNP risk allelers1027643-T
SNPsrs1027643
Merged0
SNP id current1027643
Contextintron_variant
Intergenic0
Allele frequency0.05
P value0.0000000005
Pvalue mlog9.30102999566398
P value text
Or beta1.43
%95 Ci[1.18-1.73]
PlatformIllumina [599255]
CNVN
Mapped traitNephroblastoma
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_654
Study accessionGCST001500