SNP Detail For rs10260606
1.Mapping Information
Human SNP ID rs10260606
Human chromosome chr7
Human SNP position 44544952
Pig chromosome chr18
Pig SNP position 55627702
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitCholesterol, total
Initial sampleup to 62,166 European ancestry individuals
Replication sampleNA
Region7p13
Chromosome idchr7
Chromosome position44544952
Reported geneNPC1L1
Mapped geneNPC1L1 - DDX56
Upstream gene id29881
Downstream gene id54606
SNP gene ids
Upstream gene distance3622
Downstream gene distance20465
SNP risk allelers10260606-C
SNPsrs10260606
Merged
SNP id current10260606
Contextupstream_gene_variant
Intergenic1
Allele frequency0.23
P value0.00000000001
Pvalue mlog11
P value text
Or beta0.05
%95 Ci[0.036-0.064] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traittotal cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004574
Study accessionGCST002896