Human SNP ID | rs10260606 |
---|---|
Human chromosome | chr7 |
Human SNP position | 44544952 |
Pig chromosome | chr18 |
Pig SNP position | 55627702 |
PubMed ID | 25961943 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | Cholesterol, total |
Initial sample | up to 62,166 European ancestry individuals |
Replication sample | NA |
Region | 7p13 |
Chromosome id | chr7 |
Chromosome position | 44544952 |
Reported gene | NPC1L1 |
Mapped gene | NPC1L1 - DDX56 |
Upstream gene id | 29881 |
Downstream gene id | 54606 |
SNP gene ids | |
Upstream gene distance | 3622 |
Downstream gene distance | 20465 |
SNP risk allele | rs10260606-C |
SNPs | rs10260606 |
Merged | |
SNP id current | 10260606 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.23 |
P value | 0.00000000001 |
Pvalue mlog | 11 |
P value text | |
Or beta | 0.05 |
%95 Ci | [0.036-0.064] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | total cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004574 |
Study accession | GCST002896 |