SNP Detail For rs10250997
1.Mapping Information
Human SNP ID rs10250997
Human chromosome chr7
Human SNP position 136461788
Pig chromosome chr18
Pig SNP position 13645199
2.Annotation Information
PubMed ID23453885
JournalLancet
Linkwww.ncbi.nlm.nih.gov/pubmed/23453885
StudyIdentification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.
Disease/TraitAutism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)
Initial sample6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder tr
Replication sampleNA
Region7q33
Chromosome idchr7
Chromosome position136461788
Reported geneintergenic
Mapped geneLOC105375523 - PSMC1P3
Upstream gene id105375523
Downstream gene id392100
SNP gene ids
Upstream gene distance22271
Downstream gene distance252038
SNP risk allelers10250997-C
SNPsrs10250997
Merged0
SNP id current10250997
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000008
Pvalue mlog5.09691001300805
P value text(5 degree of freedom test)
Or beta1.03
%95 Ci[0.99-1.07]
PlatformNR [1252901] (imputed)
CNVN
Mapped traitattention deficit hyperactivity disorder, unipolar depression, schizophrenia, autism spectrum disorder, bipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003888, http://www.ebi.ac.uk/efo/EFO_0003761, http://www.ebi.ac.uk/efo/EFO_0000692, http://www.ebi.ac.uk/efo/EFO_0003756, http://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST001877