SNP Detail For rs10246939
1.Mapping Information
Human SNP ID rs10246939
Human chromosome chr7
Human SNP position 141972804
Pig chromosome chr18
Pig SNP position 8358401
2.Annotation Information
PubMed ID23966204
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23966204
StudyGWAS of human bitter taste perception identifies new loci and reveals additional complexity of bitter taste genetics.
Disease/TraitBitter taste perception
Initial sample503 Brazillian ancestry individuals
Replication sample104 Brazillian ancestry individuals
Region7q34
Chromosome idchr7
Chromosome position141972804
Reported geneTas2R38
Mapped geneTAS2R38, OR9A4
Upstream gene id
Downstream gene id
SNP gene ids5726, 130075
Upstream gene distance
Downstream gene distance
SNP risk allelers10246939-?
SNPsrs10246939
Merged0
SNP id current10246939
Contextmissense_variant
Intergenic0
Allele frequencyNR
P value2E-62
Pvalue mlog61.698970004336
P value text(PROP)
Or beta0.39
%95 Ci[0.34-0.44] unit decrease
PlatformIllumina [~ 1000000]
CNVN
Mapped traitsensory perception of bitter taste
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0050913
Study accessionGCST002144