SNP Detail For rs10224002
1.Mapping Information
Human SNP ID rs10224002
Human chromosome chr7
Human SNP position 151717955
Pig chromosome chr18
Pig SNP position 5938422
2.Annotation Information
PubMed ID19862010
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19862010
StudyMultiple loci influence erythrocyte phenotypes in the CHARGE Consortium.
Disease/TraitHemoglobin
Initial sample24,167 European ancestry individuals
Replication sample9,456 European ancestry individuals
Region7q36.1
Chromosome idchr7
Chromosome position151717955
Reported genePRKAG2
Mapped genePRKAG2
Upstream gene id
Downstream gene id
SNP gene ids51422
Upstream gene distance
Downstream gene distance
SNP risk allelers10224002-G
SNPsrs10224002
Merged0
SNP id current10224002
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000000000000003
Pvalue mlog14.5228787452803
P value text
Or beta0.07
%95 Ci[0.05-0.09] g/dl increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traithemoglobin measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004509
Study accessionGCST000499
PubMed ID19862010
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19862010
StudyMultiple loci influence erythrocyte phenotypes in the CHARGE Consortium.
Disease/TraitHematocrit
Initial sample24,167 European ancestry individuals
Replication sample9,456 European ancestry individuals
Region7q36.1
Chromosome idchr7
Chromosome position151717955
Reported genePRKAG2
Mapped genePRKAG2
Upstream gene id
Downstream gene id
SNP gene ids51422
Upstream gene distance
Downstream gene distance
SNP risk allelers10224002-G
SNPsrs10224002
Merged0
SNP id current10224002
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000000000000006
Pvalue mlog14.2218487496163
P value text
Or beta0.2
%95 Ci[0.15-0.25] % increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traithematocrit
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004348
Study accessionGCST000502