SNP Detail For rs10212419
1.Mapping Information
Human SNP ID rs10212419
Human chromosome chr3
Human SNP position 139286078
Pig chromosome chr13
Pig SNP position 87816997
2.Annotation Information
PubMed ID26105758
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26105758
StudyA genome-wide association study identifies multiple loci for variation in human ear morphology.
Disease/TraitLobe size
Initial sample4,919 Latin American individuals
Replication sampleNA
Region3q23
Chromosome idchr3
Chromosome position139286078
Reported geneMRPS22, FOXL2
Mapped genePISRT1 - MRPS22
Upstream gene id140464
Downstream gene id56945
SNP gene ids
Upstream gene distance52556
Downstream gene distance57916
SNP risk allelers10212419-A
SNPsrs10212419
Merged
SNP id current10212419
Contextintron_variant
Intergenic1
Allele frequency0.52
P value0.00000000000003
Pvalue mlog13.5228787452803
P value text
Or beta0.107
%95 Ciunit increase
PlatformIllumina [671038]
CNVN
Mapped traitlobe size
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007666
Study accessionGCST002999
PubMed ID26105758
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26105758
StudyA genome-wide association study identifies multiple loci for variation in human ear morphology.
Disease/TraitEar morphology
Initial sample4,919 Latin American individuals
Replication sampleNA
Region3q23
Chromosome idchr3
Chromosome position139286078
Reported geneFOXL2, MRPS22
Mapped genePISRT1 - MRPS22
Upstream gene id140464
Downstream gene id56945
SNP gene ids
Upstream gene distance52556
Downstream gene distance57916
SNP risk allelers10212419-A
SNPsrs10212419
Merged
SNP id current10212419
Contextintron_variant
Intergenic1
Allele frequency0.52
P value0.00000000002
Pvalue mlog10.698970004336
P value text
Or beta
%95 Ci
PlatformIllumina [671038]
CNVN
Mapped traitouter ear morphology trait
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007664
Study accessionGCST003001