Human SNP ID | rs10212419 |
---|---|
Human chromosome | chr3 |
Human SNP position | 139286078 |
Pig chromosome | chr13 |
Pig SNP position | 87816997 |
PubMed ID | 26105758 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26105758 |
Study | A genome-wide association study identifies multiple loci for variation in human ear morphology. |
Disease/Trait | Lobe size |
Initial sample | 4,919 Latin American individuals |
Replication sample | NA |
Region | 3q23 |
Chromosome id | chr3 |
Chromosome position | 139286078 |
Reported gene | MRPS22, FOXL2 |
Mapped gene | PISRT1 - MRPS22 |
Upstream gene id | 140464 |
Downstream gene id | 56945 |
SNP gene ids | |
Upstream gene distance | 52556 |
Downstream gene distance | 57916 |
SNP risk allele | rs10212419-A |
SNPs | rs10212419 |
Merged | |
SNP id current | 10212419 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.52 |
P value | 0.00000000000003 |
Pvalue mlog | 13.5228787452803 |
P value text | |
Or beta | 0.107 |
%95 Ci | unit increase |
Platform | Illumina [671038] |
CNV | N |
Mapped trait | lobe size |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007666 |
Study accession | GCST002999 |
PubMed ID | 26105758 |
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26105758 |
Study | A genome-wide association study identifies multiple loci for variation in human ear morphology. |
Disease/Trait | Ear morphology |
Initial sample | 4,919 Latin American individuals |
Replication sample | NA |
Region | 3q23 |
Chromosome id | chr3 |
Chromosome position | 139286078 |
Reported gene | FOXL2, MRPS22 |
Mapped gene | PISRT1 - MRPS22 |
Upstream gene id | 140464 |
Downstream gene id | 56945 |
SNP gene ids | |
Upstream gene distance | 52556 |
Downstream gene distance | 57916 |
SNP risk allele | rs10212419-A |
SNPs | rs10212419 |
Merged | |
SNP id current | 10212419 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.52 |
P value | 0.00000000002 |
Pvalue mlog | 10.698970004336 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [671038] |
CNV | N |
Mapped trait | outer ear morphology trait |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007664 |
Study accession | GCST003001 |