Human SNP ID | rs10211524 |
---|---|
Human chromosome | chr2 |
Human SNP position | 64980940 |
Pig chromosome | chr3 |
Pig SNP position | 80810706 |
PubMed ID | 22916037 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22916037 |
Study | Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis. |
Disease/Trait | Metabolite levels |
Initial sample | 6,608 European ancestry individuals |
Replication sample | NA |
Region | 2p14 |
Chromosome id | chr2 |
Chromosome position | 64980940 |
Reported gene | SLC1A4 |
Mapped gene | LOC400958 - SLC1A4 |
Upstream gene id | 400958 |
Downstream gene id | 6509 |
SNP gene ids | |
Upstream gene distance | 48493 |
Downstream gene distance | 7505 |
SNP risk allele | rs10211524-? |
SNPs | rs10211524 |
Merged | 0 |
SNP id current | 10211524 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.39 |
P value | 0.0000000003 |
Pvalue mlog | 9.52287874528033 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [~ 2000000] (imputed) |
CNV | N |
Mapped trait | coronary artery calcification |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004723 |
Study accession | GCST001639 |
PubMed ID | 24816252 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24816252 |
Study | An atlas of genetic influences on human blood metabolites. |
Disease/Trait | Blood metabolite levels |
Initial sample | 7,824 European ancestry individuals |
Replication sample | NA |
Region | 2p14 |
Chromosome id | chr2 |
Chromosome position | 64980940 |
Reported gene | SLC1A4 |
Mapped gene | LOC400958 - SLC1A4 |
Upstream gene id | 400958 |
Downstream gene id | 6509 |
SNP gene ids | |
Upstream gene distance | 48493 |
Downstream gene distance | 7505 |
SNP risk allele | rs10211524-A |
SNPs | rs10211524 |
Merged | 0 |
SNP id current | 10211524 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.42 |
P value | 0.0000000000000006 |
Pvalue mlog | 15.2218487496163 |
P value text | (2-aminobutyrate) |
Or beta | 0.019 |
%95 Ci | [0.015-0.023] unit increase |
Platform | Affymetrix, Illumina [2100000] (imputed) |
CNV | N |
Mapped trait | blood metabolite measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005664 |
Study accession | GCST002443 |