SNP Detail For rs10211524
1.Mapping Information
Human SNP ID rs10211524
Human chromosome chr2
Human SNP position 64980940
Pig chromosome chr3
Pig SNP position 80810706
2.Annotation Information
PubMed ID22916037
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22916037
StudyNovel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.
Disease/TraitMetabolite levels
Initial sample6,608 European ancestry individuals
Replication sampleNA
Region2p14
Chromosome idchr2
Chromosome position64980940
Reported geneSLC1A4
Mapped geneLOC400958 - SLC1A4
Upstream gene id400958
Downstream gene id6509
SNP gene ids
Upstream gene distance48493
Downstream gene distance7505
SNP risk allelers10211524-?
SNPsrs10211524
Merged0
SNP id current10211524
Contextintergenic_variant
Intergenic1
Allele frequency0.39
P value0.0000000003
Pvalue mlog9.52287874528033
P value text
Or beta
%95 Ci
PlatformIllumina [~ 2000000] (imputed)
CNVN
Mapped traitcoronary artery calcification
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004723
Study accessionGCST001639
PubMed ID24816252
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24816252
StudyAn atlas of genetic influences on human blood metabolites.
Disease/TraitBlood metabolite levels
Initial sample7,824 European ancestry individuals
Replication sampleNA
Region2p14
Chromosome idchr2
Chromosome position64980940
Reported geneSLC1A4
Mapped geneLOC400958 - SLC1A4
Upstream gene id400958
Downstream gene id6509
SNP gene ids
Upstream gene distance48493
Downstream gene distance7505
SNP risk allelers10211524-A
SNPsrs10211524
Merged0
SNP id current10211524
Contextintergenic_variant
Intergenic1
Allele frequency0.42
P value0.0000000000000006
Pvalue mlog15.2218487496163
P value text(2-aminobutyrate)
Or beta0.019
%95 Ci[0.015-0.023] unit increase
PlatformAffymetrix, Illumina [2100000] (imputed)
CNVN
Mapped traitblood metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005664
Study accessionGCST002443