SNP Detail For rs10209150
1.Mapping Information
Human SNP ID rs10209150
Human chromosome chr2
Human SNP position 181464892
Pig chromosome chr15
Pig SNP position 96530249
2.Annotation Information
PubMed ID25188341
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25188341
StudyGenome-Wide Association Meta-analysis of Neuropathologic Features of Alzheimer__s Disease and Related Dementias.
Disease/TraitNeurofibrillary tangles
Initial sampleup to 4,707 individuals
Replication sampleNA
Region2q31.3
Chromosome idchr2
Chromosome position181464892
Reported geneITGA4
Mapped geneITGA4
Upstream gene id
Downstream gene id
SNP gene ids3676
Upstream gene distance
Downstream gene distance
SNP risk allelers10209150-G
SNPsrs10209150
Merged0
SNP id current10209150
Contextintron_variant
Intergenic0
Allele frequency0.9795
P value0.000006
Pvalue mlog5.22184874961635
P value text(Ordinal II)
Or beta0.591
%95 Ci[0.34-0.85] unit increase
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitneurofibrilliary tangles measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006797
Study accessionGCST002594