Human SNP ID | rs10205487 |
---|---|
Human chromosome | chr2 |
Human SNP position | 69924339 |
Pig chromosome | chr3 |
Pig SNP position | 75931096 |
PubMed ID | 24954085 |
---|---|
Journal | J Neurol Sci |
Link | www.ncbi.nlm.nih.gov/pubmed/24954085 |
Study | Novel genetic variants modify the effect of smoking on carotid plaque burden in Hispanics. |
Disease/Trait | Carotid plaque burden (smoking interaction) |
Initial sample | 665 Hispanic individuals |
Replication sample | 264 Hispanic indivduals |
Region | 2p13.3 |
Chromosome id | chr2 |
Chromosome position | 69924339 |
Reported gene | MXD1 |
Mapped gene | MXD1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4084 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10205487-A |
SNPs | rs10205487 |
Merged | 0 |
SNP id current | 10205487 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.45 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 0.38 |
%95 Ci | [0.22-0.54] unit increase |
Platform | Affymetrix [722379] |
CNV | N |
Mapped trait | carotid plaque build |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006501 |
Study accession | GCST002482 |