SNP Detail For rs10205487
1.Mapping Information
Human SNP ID rs10205487
Human chromosome chr2
Human SNP position 69924339
Pig chromosome chr3
Pig SNP position 75931096
2.Annotation Information
PubMed ID24954085
JournalJ Neurol Sci
Linkwww.ncbi.nlm.nih.gov/pubmed/24954085
StudyNovel genetic variants modify the effect of smoking on carotid plaque burden in Hispanics.
Disease/TraitCarotid plaque burden (smoking interaction)
Initial sample665 Hispanic individuals
Replication sample264 Hispanic indivduals
Region2p13.3
Chromosome idchr2
Chromosome position69924339
Reported geneMXD1
Mapped geneMXD1
Upstream gene id
Downstream gene id
SNP gene ids4084
Upstream gene distance
Downstream gene distance
SNP risk allelers10205487-A
SNPsrs10205487
Merged0
SNP id current10205487
Contextintron_variant
Intergenic0
Allele frequency0.45
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.38
%95 Ci[0.22-0.54] unit increase
PlatformAffymetrix [722379]
CNVN
Mapped traitcarotid plaque build
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006501
Study accessionGCST002482