Human SNP ID | rs10203166 |
---|---|
Human chromosome | chr2 |
Human SNP position | 59562570 |
Pig chromosome | chr3 |
Pig SNP position | 86354613 |
PubMed ID | 23382691 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
Disease/Trait | IgG glycosylation |
Initial sample | 2,247 European ancestry individuals |
Replication sample | NA |
Region | 2p16.1 |
Chromosome id | chr2 |
Chromosome position | 59562570 |
Reported gene | NR |
Mapped gene | LOC105374754 - LOC105374755 |
Upstream gene id | 105374754 |
Downstream gene id | 105374755 |
SNP gene ids | |
Upstream gene distance | 174221 |
Downstream gene distance | 702348 |
SNP risk allele | rs10203166-C |
SNPs | rs10203166 |
Merged | 0 |
SNP id current | 10203166 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.974135912544803 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (IGP5) |
Or beta | 0.7988 |
%95 Ci | [0.46-1.14] unit increase |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | serum IgG glycosylation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
Study accession | GCST001848 |