SNP Detail For rs10203166
1.Mapping Information
Human SNP ID rs10203166
Human chromosome chr2
Human SNP position 59562570
Pig chromosome chr3
Pig SNP position 86354613
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region2p16.1
Chromosome idchr2
Chromosome position59562570
Reported geneNR
Mapped geneLOC105374754 - LOC105374755
Upstream gene id105374754
Downstream gene id105374755
SNP gene ids
Upstream gene distance174221
Downstream gene distance702348
SNP risk allelers10203166-C
SNPsrs10203166
Merged0
SNP id current10203166
Contextintron_variant
Intergenic1
Allele frequency0.974135912544803
P value0.000004
Pvalue mlog5.39794000867203
P value text(IGP5)
Or beta0.7988
%95 Ci[0.46-1.14] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848