SNP Detail For rs10194115
1.Mapping Information
Human SNP ID rs10194115
Human chromosome chr2
Human SNP position 47012873
Pig chromosome chr3
Pig SNP position 99608454
2.Annotation Information
PubMed ID20932654
JournalInt J Radiat Oncol Biol Phys
Linkwww.ncbi.nlm.nih.gov/pubmed/20932654
StudyGenome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.
Disease/TraitErectile dysfunction and prostate cancer treatment
Initial sample27 African American cases, 52 African American controls
Replication sampleNA
Region2p21
Chromosome idchr2
Chromosome position47012873
Reported geneTTC7A
Mapped geneTTC7A
Upstream gene id
Downstream gene id
SNP gene ids57217
Upstream gene distance
Downstream gene distance
SNP risk allelers10194115-?
SNPsrs10194115
Merged0
SNP id current10194115
Contextintron_variant
Intergenic0
Allele frequency0.07
P value0.0000005
Pvalue mlog6.30102999566398
P value text
Or beta9
%95 Ci[NR]
PlatformAffymetrix [512497]
CNVN
Mapped traitresponse to radiation, prostate carcinoma, erectile dysfunction
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0009314, http://www.ebi.ac.uk/efo/EFO_0001663, http://www.ebi.ac.uk/efo/EFO_0004234
Study accessionGCST000824