SNP Detail For rs10189629
1.Mapping Information
Human SNP ID rs10189629
Human chromosome chr2
Human SNP position 102263004
Pig chromosome chr3
Pig SNP position 54560145
2.Annotation Information
PubMed ID23817569
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23817569
StudyA genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.
Disease/TraitSelf-reported allergy
Initial sample53,862 European ancestry individuals
Replication sampleNA
Region2q12.1
Chromosome idchr2
Chromosome position102263004
Reported geneIL1RL1, IL1RL2
Mapped geneFAM183DP - IL1RL1
Upstream gene id101060105
Downstream gene id9173
SNP gene ids
Upstream gene distance12210
Downstream gene distance48498
SNP risk allelers10189629-A
SNPsrs10189629
Merged0
SNP id current10189629
Contextintergenic_variant
Intergenic1
Allele frequency0.145
P value0.0000000000000002
Pvalue mlog15.698970004336
P value text
Or beta0.1448
%95 Ci[0.11-0.18] unit decrease
PlatformIllumina [2400000] (imputed)
CNVN
Mapped traitallergy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003785
Study accessionGCST002083