SNP Detail For rs10189050
1.Mapping Information
Human SNP ID rs10189050
Human chromosome chr2
Human SNP position 22901686
Pig chromosome chr3
Pig SNP position 122918991
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region2p24.1
Chromosome idchr2
Chromosome position22901686
Reported geneKLHL29
Mapped geneLOC105374322 - LOC101929251
Upstream gene id105374322
Downstream gene id101929251
SNP gene ids
Upstream gene distance356923
Downstream gene distance117289
SNP risk allelers10189050-C
SNPsrs10189050
Merged0
SNP id current10189050
Contextintergenic_variant
Intergenic1
Allele frequency0.053
P value0.000004
Pvalue mlog5.39794000867203
P value text(Vigorous activity )
Or beta0.03
%95 Ci[NR] min/d increase
PlatformIllumina [899892]
CNVN
Mapped traitphysical activity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003940
Study accessionGCST001762