SNP Detail For rs10185424
1.Mapping Information
Human SNP ID rs10185424
Human chromosome chr2
Human SNP position 102046427
Pig chromosome chr3
Pig SNP position 54883358
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitUlcerative colitis
Initial sample6,968 European ancestry cases, 20,464 European ancestry controls
Replication sample10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region2q11.2
Chromosome idchr2
Chromosome position102046427
Reported geneNR
Mapped geneIL1R2 - LOC105373515
Upstream gene id7850
Downstream gene id105373515
SNP gene ids
Upstream gene distance17883
Downstream gene distance17379
SNP risk allelers10185424-A
SNPsrs10185424
Merged
SNP id current10185424
Contextregulatory_region_variant
Intergenic1
Allele frequency0.4604
P value0.00000000000001
Pvalue mlog14
P value text(EA)
Or beta1.1014192
%95 Ci[1.08-1.13]
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST003045
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitCrohn__s disease
Initial sample5,956 European ancestry cases, 14,927 European ancestry controls
Replication sample14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region2q11.2
Chromosome idchr2
Chromosome position102046427
Reported geneNR
Mapped geneIL1R2 - LOC105373515
Upstream gene id7850
Downstream gene id105373515
SNP gene ids
Upstream gene distance17883
Downstream gene distance17379
SNP risk allelers10185424-A
SNPsrs10185424
Merged
SNP id current10185424
Contextregulatory_region_variant
Intergenic1
Allele frequency0.4604
P value0.000000003
Pvalue mlog8.52287874528033
P value text(EA)
Or beta1.0748146
%95 Ci[1.05-1.1]
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST003044