SNP Detail For rs10181042
1.Mapping Information
Human SNP ID rs10181042
Human chromosome chr2
Human SNP position 60997124
Pig chromosome chr3
Pig SNP position 84901706
2.Annotation Information
PubMed ID21102463
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21102463
StudyGenome-wide meta-analysis increases to 71 the number of confirmed Crohn__s disease susceptibility loci.
Disease/TraitCrohn__s disease
Initial sample6,333 European ancestry cases, 15,056 European ancestry controls
Replication sample15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios
Region2p16.1
Chromosome idchr2
Chromosome position60997124
Reported geneREL, C2orf74
Mapped genePUS10
Upstream gene id
Downstream gene id
SNP gene ids150962
Upstream gene distance
Downstream gene distance
SNP risk allelers10181042-T
SNPsrs10181042
Merged0
SNP id current10181042
Contextintron_variant
Intergenic0
Allele frequency0.42
P value0.000000007
Pvalue mlog8.15490195998574
P value text
Or beta1.14
%95 Ci[1.09-1.19]
PlatformAffymetrix, Illumina [953241] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST000879