Human SNP ID | rs10174573 |
---|---|
Human chromosome | chr2 |
Human SNP position | 192877447 |
Pig chromosome | chr15 |
Pig SNP position | 108994295 |
PubMed ID | 23377640 |
---|---|
Journal | Am J Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23377640 |
Study | Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies. |
Disease/Trait | Major depressive disorder |
Initial sample | Up to 2,256 European ancestry cases |
Replication sample | NA |
Region | 2q32.3 |
Chromosome id | chr2 |
Chromosome position | 192877447 |
Reported gene | intergenic |
Mapped gene | PCGEM1 - LOC645314 |
Upstream gene id | 64002 |
Downstream gene id | 645314 |
SNP gene ids | |
Upstream gene distance | 100548 |
Downstream gene distance | 399135 |
SNP risk allele | rs10174573-T |
SNPs | rs10174573 |
Merged | 0 |
SNP id current | 10174573 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.57 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (partial response - 2 weeks) |
Or beta | 1.564 |
%95 Ci | [1.39-1.74] |
Platform | Affymetrix, Illumina [1200000] (imputed) |
CNV | N |
Mapped trait | unipolar depression |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003761 |
Study accession | GCST001850 |