SNP Detail For rs10174573
1.Mapping Information
Human SNP ID rs10174573
Human chromosome chr2
Human SNP position 192877447
Pig chromosome chr15
Pig SNP position 108994295
2.Annotation Information
PubMed ID23377640
JournalAm J Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23377640
StudyCommon genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies.
Disease/TraitMajor depressive disorder
Initial sampleUp to 2,256 European ancestry cases
Replication sampleNA
Region2q32.3
Chromosome idchr2
Chromosome position192877447
Reported geneintergenic
Mapped genePCGEM1 - LOC645314
Upstream gene id64002
Downstream gene id645314
SNP gene ids
Upstream gene distance100548
Downstream gene distance399135
SNP risk allelers10174573-T
SNPsrs10174573
Merged0
SNP id current10174573
Contextintergenic_variant
Intergenic1
Allele frequency0.57
P value0.000002
Pvalue mlog5.69897000433601
P value text(partial response - 2 weeks)
Or beta1.564
%95 Ci[1.39-1.74]
PlatformAffymetrix, Illumina [1200000] (imputed)
CNVN
Mapped traitunipolar depression
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003761
Study accessionGCST001850