Human SNP ID | rs1016988 |
---|---|
Human chromosome | chr5 |
Human SNP position | 132408882 |
Pig chromosome | chr2 |
Pig SNP position | 140102591 |
PubMed ID | 20031577 |
---|---|
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20031577 |
Study | Novel loci, including those related to Crohn disease, psoriasis, and inflammation, identified in a genome-wide association study of fibrinogen in 17 686 women: the Women__s Genome Health Study. |
Disease/Trait | Fibrinogen |
Initial sample | 17,686 European ancestry female individuals |
Replication sample | NA |
Region | 5q31.1 |
Chromosome id | chr5 |
Chromosome position | 132408882 |
Reported gene | IRF1, SLC22A5, SLC22A4 |
Mapped gene | SLC22A5 - C5orf56 |
Upstream gene id | 6584 |
Downstream gene id | 441108 |
SNP gene ids | |
Upstream gene distance | 13268 |
Downstream gene distance | 1891 |
SNP risk allele | rs1016988-G |
SNPs | rs1016988 |
Merged | 0 |
SNP id current | 1016988 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.2 |
P value | 0.000000000001 |
Pvalue mlog | 12 |
P value text | |
Or beta | 6.84 |
%95 Ci | [NR] mg/dl decrease |
Platform | Illumina [337343] |
CNV | N |
Mapped trait | fibrinogen measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004623 |
Study accession | GCST000368 |