SNP Detail For rs1016988
1.Mapping Information
Human SNP ID rs1016988
Human chromosome chr5
Human SNP position 132408882
Pig chromosome chr2
Pig SNP position 140102591
2.Annotation Information
PubMed ID20031577
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20031577
StudyNovel loci, including those related to Crohn disease, psoriasis, and inflammation, identified in a genome-wide association study of fibrinogen in 17 686 women: the Women__s Genome Health Study.
Disease/TraitFibrinogen
Initial sample17,686 European ancestry female individuals
Replication sampleNA
Region5q31.1
Chromosome idchr5
Chromosome position132408882
Reported geneIRF1, SLC22A5, SLC22A4
Mapped geneSLC22A5 - C5orf56
Upstream gene id6584
Downstream gene id441108
SNP gene ids
Upstream gene distance13268
Downstream gene distance1891
SNP risk allelers1016988-G
SNPsrs1016988
Merged0
SNP id current1016988
Contextupstream_gene_variant
Intergenic1
Allele frequency0.2
P value0.000000000001
Pvalue mlog12
P value text
Or beta6.84
%95 Ci[NR] mg/dl decrease
PlatformIllumina [337343]
CNVN
Mapped traitfibrinogen measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004623
Study accessionGCST000368