PigVar

1.Mapping Information

Human SNP ID	rs1016287
Human chromosome	chr2
Human SNP position	59078490
Pig chromosome	chr3
Pig SNP position	86997386

2.Annotation Information

PubMed ID	25673413
Journal	Nature
Link	www.ncbi.nlm.nih.gov/pubmed/25673413
Study	Genetic studies of body mass index yield new insights for obesity biology.
Disease/Trait	Body mass index
Initial sample	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sample	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region	2p16.1
Chromosome id	chr2
Chromosome position	59078490
Reported gene	FLJ30838
Mapped gene	LINC01122 - LOC101927285
Upstream gene id	400955
Downstream gene id	101927285
SNP gene ids
Upstream gene distance	14724
Downstream gene distance	139218
SNP risk allele	rs1016287-T
SNPs	rs1016287
Merged	0
SNP id current	1016287
Context	intergenic_variant
Intergenic	1
Allele frequency	0.288
P value	0.000004
Pvalue mlog	5.39794000867203
P value text	(EA, men)
Or beta	0.02
%95 Ci	[0.012-0.029] kg/m2 increase
Platform	Affymetrix, Illumina [2550021]
CNV	N
Mapped trait	body mass index
Mapped trait URI	http://www.ebi.ac.uk/efo/EFO_0004340
Study accession	GCST002783

PubMed ID	25673413
Journal	Nature
Link	www.ncbi.nlm.nih.gov/pubmed/25673413
Study	Genetic studies of body mass index yield new insights for obesity biology.
Disease/Trait	Body mass index
Initial sample	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sample	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region	2p16.1
Chromosome id	chr2
Chromosome position	59078490
Reported gene	FLJ30838
Mapped gene	LINC01122 - LOC101927285
Upstream gene id	400955
Downstream gene id	101927285
SNP gene ids
Upstream gene distance	14724
Downstream gene distance	139218
SNP risk allele	rs1016287-T
SNPs	rs1016287
Merged	0
SNP id current	1016287
Context	intergenic_variant
Intergenic	1
Allele frequency	0.285
P value	0.000000006
Pvalue mlog	8.22184874961635
P value text	(EA, women)
Or beta	0.025
%95 Ci	[0.017-0.034] kg/m2 increase
Platform	Affymetrix, Illumina [2550021]
CNV	N
Mapped trait	body mass index
Mapped trait URI	http://www.ebi.ac.uk/efo/EFO_0004340
Study accession	GCST002783

PubMed ID	25673413
Journal	Nature
Link	www.ncbi.nlm.nih.gov/pubmed/25673413
Study	Genetic studies of body mass index yield new insights for obesity biology.
Disease/Trait	Body mass index
Initial sample	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sample	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region	2p16.1
Chromosome id	chr2
Chromosome position	59078490
Reported gene	FLJ30838
Mapped gene	LINC01122 - LOC101927285
Upstream gene id	400955
Downstream gene id	101927285
SNP gene ids
Upstream gene distance	14724
Downstream gene distance	139218
SNP risk allele	rs1016287-T
SNPs	rs1016287
Merged	0
SNP id current	1016287
Context	intergenic_variant
Intergenic	1
Allele frequency	0.287
P value	0.00000000002
Pvalue mlog	10.698970004336
P value text	(EA)
Or beta	0.023
%95 Ci	[0.016-0.03] kg/m2 increase
Platform	Affymetrix, Illumina [2550021]
CNV	N
Mapped trait	body mass index
Mapped trait URI	http://www.ebi.ac.uk/efo/EFO_0004340
Study accession	GCST002783

PubMed ID	25673413
Journal	Nature
Link	www.ncbi.nlm.nih.gov/pubmed/25673413
Study	Genetic studies of body mass index yield new insights for obesity biology.
Disease/Trait	Body mass index
Initial sample	up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sample	up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region	2p16.1
Chromosome id	chr2
Chromosome position	59078490
Reported gene	FLJ30838
Mapped gene	LINC01122 - LOC101927285
Upstream gene id	400955
Downstream gene id	101927285
SNP gene ids
Upstream gene distance	14724
Downstream gene distance	139218
SNP risk allele	rs1016287-T
SNPs	rs1016287
Merged	0
SNP id current	1016287
Context	intergenic_variant
Intergenic	1
Allele frequency	0.285
P value	0.000000000004
Pvalue mlog	11.397940008672
P value text
Or beta	0.023
%95 Ci	[0.016-0.029] kg/m2 increase
Platform	Affymetrix, Illumina [2550021]
CNV	N
Mapped trait	body mass index
Mapped trait URI	http://www.ebi.ac.uk/efo/EFO_0004340
Study accession	GCST002783

THE PIG VARIATIONS AND POSITIVE SELECTION DATABASE