Human SNP ID | rs10162694 |
---|---|
Human chromosome | chr15 |
Human SNP position | 35054340 |
Pig chromosome | chr1 |
Pig SNP position | 152130766 |
PubMed ID | 23897914 |
---|---|
Journal | Pediatrics |
Link | www.ncbi.nlm.nih.gov/pubmed/23897914 |
Study | A genome-wide association study (GWAS) for bronchopulmonary dysplasia. |
Disease/Trait | Bronchopulmonary dysplasia |
Initial sample | 117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European |
Replication sample | 371 newborn cases, 424 newborn controls |
Region | 15q14 |
Chromosome id | chr15 |
Chromosome position | 35054340 |
Reported gene | ZNF770, LOC441722 |
Mapped gene | LOC105370763 - LOC105370765 |
Upstream gene id | 105370763 |
Downstream gene id | 105370765 |
SNP gene ids | |
Upstream gene distance | 39003 |
Downstream gene distance | 25471 |
SNP risk allele | rs10162694-A |
SNPs | rs10162694 |
Merged | 0 |
SNP id current | 10162694 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.08 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (Dominant model) |
Or beta | 1.55 |
%95 Ci | [NR] |
Platform | Illumina [1795103] |
CNV | N |
Mapped trait | Bronchopulmonary dysplasia |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_70589 |
Study accession | GCST002104 |