SNP Detail For rs10162694
1.Mapping Information
Human SNP ID rs10162694
Human chromosome chr15
Human SNP position 35054340
Pig chromosome chr1
Pig SNP position 152130766
2.Annotation Information
PubMed ID23897914
JournalPediatrics
Linkwww.ncbi.nlm.nih.gov/pubmed/23897914
StudyA genome-wide association study (GWAS) for bronchopulmonary dysplasia.
Disease/TraitBronchopulmonary dysplasia
Initial sample117 African American newborn cases, 108 African American newborn controls, 448 Hispanic newborn cases, 460 Hispanic newborn controls, 74 Asian or Pacific Islander ancestry newborn cases, 93 Asian or Pacific Islander ancestry newborn controls, 174 European
Replication sample371 newborn cases, 424 newborn controls
Region15q14
Chromosome idchr15
Chromosome position35054340
Reported geneZNF770, LOC441722
Mapped geneLOC105370763 - LOC105370765
Upstream gene id105370763
Downstream gene id105370765
SNP gene ids
Upstream gene distance39003
Downstream gene distance25471
SNP risk allelers10162694-A
SNPsrs10162694
Merged0
SNP id current10162694
Contextintergenic_variant
Intergenic1
Allele frequency0.08
P value0.000009
Pvalue mlog5.04575749056067
P value text(Dominant model)
Or beta1.55
%95 Ci[NR]
PlatformIllumina [1795103]
CNVN
Mapped traitBronchopulmonary dysplasia
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_70589
Study accessionGCST002104