SNP Detail For rs10160456
1.Mapping Information
Human SNP ID rs10160456
Human chromosome chr11
Human SNP position 27315157
Pig chromosome chr2
Pig SNP position 35681599
2.Annotation Information
PubMed ID24945404
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24945404
StudyPhenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.
Disease/TraitBone mineral density (paediatric, skull)
Initial sample7,976 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children
Replication sampleNA
Region11p14.1
Chromosome idchr11
Chromosome position27315157
Reported geneCCDC34, LGR4, LIN7C
Mapped geneLOC105376601 - CCDC34
Upstream gene id105376601
Downstream gene id91057
SNP gene ids
Upstream gene distance19072
Downstream gene distance23357
SNP risk allelers10160456-C
SNPsrs10160456
Merged0
SNP id current10160456
Contextintergenic_variant
Intergenic1
Allele frequency0.38
P value0.000008
Pvalue mlog5.09691001300805
P value text(Conditional)
Or beta0.0681
%95 Ci[0.038-0.098] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST002493