Human SNP ID | rs10160456 |
---|---|
Human chromosome | chr11 |
Human SNP position | 27315157 |
Pig chromosome | chr2 |
Pig SNP position | 35681599 |
PubMed ID | 24945404 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24945404 |
Study | Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment. |
Disease/Trait | Bone mineral density (paediatric, skull) |
Initial sample | 7,976 European ancestry children, 289 Surinamese ancestry children, 300 Turkish ancestry children, 232 Moroccan ancestry children, 588 children |
Replication sample | NA |
Region | 11p14.1 |
Chromosome id | chr11 |
Chromosome position | 27315157 |
Reported gene | CCDC34, LGR4, LIN7C |
Mapped gene | LOC105376601 - CCDC34 |
Upstream gene id | 105376601 |
Downstream gene id | 91057 |
SNP gene ids | |
Upstream gene distance | 19072 |
Downstream gene distance | 23357 |
SNP risk allele | rs10160456-C |
SNPs | rs10160456 |
Merged | 0 |
SNP id current | 10160456 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.38 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | (Conditional) |
Or beta | 0.0681 |
%95 Ci | [0.038-0.098] unit increase |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST002493 |