SNP Detail For rs10152591
1.Mapping Information
Human SNP ID rs10152591
Human chromosome chr15
Human SNP position 69755818
Pig chromosome chr1
Pig SNP position 185627403
2.Annotation Information
PubMed ID20881960
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/20881960
StudyHundreds of variants clustered in genomic loci and biological pathways affect human height.
Disease/TraitHeight
Initial sample133,653 European ancestry individuals
Replication sample50,074 European ancestry individuals
Region15q23
Chromosome idchr15
Chromosome position69755818
Reported geneTLE3
Mapped genePCAT29 - LINC00593
Upstream gene id104472713
Downstream gene id414926
SNP gene ids
Upstream gene distance60068
Downstream gene distance79416
SNP risk allelers10152591-A
SNPsrs10152591
Merged0
SNP id current10152591
Contextregulatory_region_variant
Intergenic1
Allele frequency0.91
P value0.0000000003
Pvalue mlog9.52287874528033
P value text
Or beta0.041
%95 Ci[NR] unit increase
PlatformAffymetrix, Illumina [2834208] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000817