SNP Detail For rs10142466
1.Mapping Information
Human SNP ID rs10142466
Human chromosome chr14
Human SNP position 68805067
Pig chromosome chr7
Pig SNP position 98818708
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region14q24.1
Chromosome idchr14
Chromosome position68805067
Reported geneNR
Mapped geneLOC105370548
Upstream gene id
Downstream gene id
SNP gene ids105370548
Upstream gene distance
Downstream gene distance
SNP risk allelers10142466-?
SNPsrs10142466
Merged
SNP id current10142466
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.00000001
Pvalue mlog8
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043